1. Databases | 1.1 REPRODUCTION-2DPAGE Two-dimensional polyacrylamide gel electrophoresis database in reproductive medicine *Please cite: Huang, X.Y. and J.H. Sha, Proteomics of spermatogenesis: from protein lists to understanding the regulation of male fertility and infertility. Asian J Androl, 2011. 13(1): p. 18-23. 1.2 LC-MS/MS Proteomic Databases Proteomics Database in Reproductive Medicine *Please cite: Zhou, T., Z.M. Zhou, and X.J. Guo, Bioinformatics for spermatogenesis: annotation of male reproduction based on proteomics. Asian J Androl, 2013. 1.3 mUbiSiDa Database of mammalian protein ubiquitination site *Please cite: Chen T, Zhou T, He B, Yu H, Guo X, et al. (2014) mUbiSiDa: A Comprehensive Database for Protein Ubiquitination Sites in Mammals. PLoS ONE 9(1): e85744. 1.4 CTatlas Cancer-Testis gene Atlas CTatlas is a catalog of human cancer-testis genes defined by high-throughput RNA sequencing (RNA-seq) data from thousands of normal and cancer tissues spanning diverse cancer and tissue types. | | | 2. Bioinformatics tools | 2.1 microDoR Human Prediction of Human miRNA-Mediated Gene Silencing: mRNA degradation or translational repression *Please cite: Song X, Cheng L, Zhou T, Guo X, Zhang X, Chen YP, Han P, Sha J. Predicting miRNA-mediated gene silencing mode based on miRNA-target duplex features. Comput Biol Med. 2012 Jan;42(1):1-7. 2.2 SProtP Human Recognition of short-lived proteins based on sequence-derived features in human cells *Please cite: Song X, Zhou T, Jia H, Guo X, Zhang X, Han P, Sha J. SProtP: a web server to recognize those short-lived proteins based on sequence-derived features in human cells. PLoS One. 2011;6(11):e27836. | | | |
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